召集壮士帮忙测试 TinyTeX

yihui · 2018年1月15日

Cloud2016 来来，给你安排个小任务，看你是否可以在 Windows 下重现这个帖子里的问题，可以的话帮忙修一下：https://d.cosx.org/d/419665-rmarkdown/30

Cloud2016 · 2018年1月16日

yihui 问题能重现，可是我不会修复，谢大大太瞧得起我啦

只要不用R Notebook输出html就没关系，警告信息不随html/PDF文件走

学校的模板比较奇葩，如参考文献格式还是国标2005版（现在是2015版），模板风格都是很多年前的，还有很多细节要调整 <https://github.com/XiangyunHuang/CUMTB-Master-Thesis>

yufree · 2018年1月16日

最近尝试了下 docker 发现 cboettig 大人已经在 rocker 里整合了 tinytex，一个完整的 verse 镜像 915.6MB，而没有 tex 支持的 tidyverse 镜像是 666MB ，解压后可能大些，但作为包含IDE的完整数据分析环境来分发做可重复性研究已经没什么问题了，甚至可以把 rticles 写的论文都包进去分发，后续看要不要也把 xaringan 包进去，这样就从分析到写作到演讲一条龙服务了。

ps: 一个临时的小问题是 rmarkdown 的 CRAN 版本还没更新，直接用服务器版 RStudio 上的 knit 按钮编不出来，要么在 Dockerfile 里装 rmarkdown 的 github 版本，要么就是不用按钮，用 tinytex::pdflatex('asdf.tex') 直接去编译 tex 文件，或者就是等 CRAN 上的更新

yihui · 2018年1月16日

yufree 我计划下周把 rmarkdown 发 CRAN，到时候就可以正式昭告天下了：至少对 R 用户来说，LaTeX 问题至此基本全剧终。

yihui · 2018年1月19日

Cloud2016 现在可以直接在安装过程中就自定义 CTAN 镜像了，不过要注意默认情况下应该不能用 HTTPS 的镜像：https://github.com/yihui/tinytex/issues/14#issuecomment-359074352

麻烦有空的壮士们再帮我测试一下。没问题的话，我明天再提交 CRAN。谢谢！

yufree · 2018年1月20日

yihui 我试了下科大的镜像似乎 https 也可以，但有个小问题，帮助文件里 uninstall_tinytex(force = FALSE, dir = texlive_root()) 的 texlive_root() 函数没有导出，得用 tinytex:::texlive_root() 才能用

Cloud2016 · 2018年1月20日

yihui 我试了清华的镜像，也可以（速度飞快），下面是测试日志

sessionInfo()
R version 3.4.3 (2017-11-30)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Debian GNU/Linux 9 (stretch)

Matrix products: default
BLAS: /usr/lib/openblas-base/libblas.so.3
LAPACK: /usr/lib/libopenblasp-r0.2.19.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=en_US.UTF-8       
 [4] LC_COLLATE=en_US.UTF-8     LC_MONETARY=en_US.UTF-8    LC_MESSAGES=C             
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] compiler_3.4.3 tools_3.4.3    yaml_2.1.16   
> 
> 
> 
> packageVersion('tinytex')
[1] ‘0.2.13’
> library(help=tinytex)
> devtools::install_github('yihui/tinytex')
Downloading GitHub repo yihui/tinytex@master
from URL https://api.github.com/repos/yihui/tinytex/zipball/master
Installing tinytex
'/usr/local/lib/R/bin/R' --no-site-file --no-environ --no-save --no-restore --quiet CMD INSTALL  \
  '/tmp/RtmpY1WNSp/devtoolsa213ee4536/yihui-tinytex-3798627'  \
  --library='/usr/local/lib/R/site-library' --install-tests 

* installing *source* package ‘tinytex’ ...
** R
** tests
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (tinytex)
> tinytex::install_tinytex(TRUE, repository = 'http://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet')
trying URL 'https://github.com/yihui/tinytex/raw/master/tools/install-unx.sh'
Content type 'text/plain; charset=utf-8' length 604 bytes
==================================================
downloaded 604 bytes

Downloading install-tl-unx.tar.gz to /tmp ...
--2018-01-20 07:11:52--  http://mirror.ctan.org/systems/texlive/tlnet/install-tl-unx.tar.gz
Resolving mirror.ctan.org (mirror.ctan.org)... 176.28.54.184, 2a01:488:67:1000:b01c:36b8:0:1
Connecting to mirror.ctan.org (mirror.ctan.org)|176.28.54.184|:80... connected.
HTTP request sent, awaiting response... 302 Found
Location: http://mirror.lzu.edu.cn/CTAN/systems/texlive/tlnet/install-tl-unx.tar.gz [following]
--2018-01-20 07:11:52--  http://mirror.lzu.edu.cn/CTAN/systems/texlive/tlnet/install-tl-unx.tar.gz
Resolving mirror.lzu.edu.cn (mirror.lzu.edu.cn)... 202.201.0.160, 2001:da8:c000::160
Connecting to mirror.lzu.edu.cn (mirror.lzu.edu.cn)|202.201.0.160|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 4071742 (3.9M) [application/octet-stream]
Saving to: ‘install-tl-unx.tar.gz’

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2018-01-20 07:11:54 (2.32 MB/s) - ‘install-tl-unx.tar.gz’ saved [4071742/4071742]

--2018-01-20 07:11:54--  https://github.com/yihui/tinytex/raw/master/tools/texlive.profile
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2018-01-20 07:11:56 (12.3 MB/s) - ‘texlive.profile’ saved [295/295]

Automated TeX Live installation using profile: ../texlive.profile
Loading http://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet/tlpkg/texlive.tlpdb
Installing TeX Live 2017 from: http://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet (not verified)
Platform: x86_64-linux => 'GNU/Linux on x86_64'
Distribution: net  (downloading)
Using URL: http://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet
Directory for temporary files: /tmp/yKwnP57M0C
Installing to: ./
Installing [1/7, time/total: ??:??/??:??]: hyphen-base [22k]
Installing [2/7, time/total: 00:00/00:00]: kpathsea [31k]
Installing [3/7, time/total: 00:00/00:00]: kpathsea.x86_64-linux [46k]
Installing [4/7, time/total: 00:00/00:00]: tetex [70k]
Installing [5/7, time/total: 00:00/00:00]: tetex.x86_64-linux [1k]
Installing [6/7, time/total: 00:00/00:00]: texlive.infra [203k]
Installing [7/7, time/total: 00:00/00:00]: texlive.infra.x86_64-linux [90k]
Time used for installing the packages: 00:00
running mktexlsr ./texmf-dist ...
writing fmtutil.cnf to ./texmf-dist/web2c/fmtutil.cnf
writing updmap.cfg to ./texmf-dist/web2c/updmap.cfg
writing language.dat to ./texmf-var/tex/generic/config/language.dat
writing language.def to ./texmf-var/tex/generic/config/language.def
writing language.dat.lua to ./texmf-var/tex/generic/config/language.dat.lua
running mktexlsr ./texmf-var ./texmf-config ./texmf-dist ...
running updmap-sys --nohash ...done
re-running mktexlsr ./texmf-var ./texmf-config ...
pre-generating all format files, be patient...
running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-strict --all ...done
running package-specific postactions
finished with package-specific postactions

Logfile: ./install-tl.log
tlmgr: setting default package repository to http://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet
tlmgr: package repository http://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet (not verified: gpg unavailable)
tlmgr: no updates available
tlmgr: package repository http://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet (not verified: gpg unavailable)
[1/19, ??:??/??:??] install: babel [134k]
[2/19, 00:01/01:29] install: cm [233k]
[3/19, 00:01/00:32] install: etex [12k]
[4/19, 00:01/00:31] install: knuth-lib [30k]
[5/19, 00:01/00:29] install: latex [161k]
[6/19, 00:01/00:21] install: latex-bin.x86_64-linux [1k]
[7/19, 00:01/00:21] install: latex-bin [1k]
[8/19, 00:01/00:21] install: latex-fonts [18k]
[9/19, 00:01/00:20] install: latexconfig [5k]
[10/19, 00:01/00:20] install: luatex.x86_64-linux [3442k]
[11/19, 00:03/00:08] install: luatex [13k]
[12/19, 00:03/00:08] install: pdftex.x86_64-linux [763k]
[13/19, 00:04/00:09] install: pdftex [36k]
[14/19, 00:04/00:09] install: plain [60k]
[15/19, 00:04/00:09] install: tex-ini-files [4k]
[16/19, 00:04/00:09] install: unicode-data [220k]
[17/19, 00:04/00:09] install: xetex.x86_64-linux [6880k]
[18/19, 00:07/00:07] install: xetex [7k]
[19/19, 00:07/00:07] install: xetexconfig [1k]
running mktexlsr ...
done running mktexlsr.
running updmap-sys ...
done running updmap-sys.
regenerating fmtutil.cnf in /tmp/texlive/texmf-dist
running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine xetex ...
done running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine xetex.
running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine luatex ...
done running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine luatex.
running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine luajittex ...
done running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine luajittex.
running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine pdftex ...
done running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine pdftex.
tlmgr: package log updated: /tmp/texlive/texmf-var/web2c/tlmgr.log
tlmgr: package repository http://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet (not verified: gpg unavailable)
[1/49, ??:??/??:??] install: amscls [32k]
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[23/49, 00:03/00:14] install: hyperref [106k]
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[34/49, 00:12/00:14] install: makeindex [5k]
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running mktexlsr ...
done running mktexlsr.
running updmap-sys ...
done running updmap-sys.
regenerating fmtutil.cnf in /home/xiangyun/.TinyTeX/texmf-dist
running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --byfmt mf ...
done running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --byfmt mf.
tlmgr: package log updated: /home/xiangyun/.TinyTeX/texmf-var/web2c/tlmgr.log
TinyTeX installed to /home/xiangyun/.TinyTeX
Warning message:
In normalizePath("~/bin") :
  path[1]="/home/xiangyun/bin": No such file or directory
> packageVersion('tinytex')
[1] ‘0.2.15’

只是在最后的时候有个警告，不知为什么？事实上，目录 /home/xiangyun/bin 是存在的

yihui · 2018年1月20日

Cloud2016 谢谢！直接在 R 里面运行 normalizePath("~/bin") 也会出警告吗？path.expand("~/bin") 是否成功？（我估计也不行）

环境变量 Sys.getenv('HOME') 呢？

Cloud2016 · 2018年1月21日

yihui 都能运行正常，但是终端里 tex -v 没有反应，应该是路径没加上，测试环境是拉取 rocker/tidyverse 镜像，里面不包含TeX套件

> tinytex::install_tinytex(TRUE, repository = 'http://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet')
trying URL 'https://github.com/yihui/tinytex/raw/master/tools/install-unx.sh'
Content type 'text/plain; charset=utf-8' length 604 bytes
==================================================
downloaded 604 bytes

Downloading install-tl-unx.tar.gz to /tmp ...
Automated TeX Live installation using profile: ../texlive.profile
Loading http://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet/tlpkg/texlive.tlpdb
Installing TeX Live 2017 from: http://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet (not verified)
Platform: x86_64-linux => 'GNU/Linux on x86_64'
Distribution: net  (downloading)
Using URL: http://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet
Directory for temporary files: /tmp/GQudatKm4j
Installing to: ./
Installing [1/7, time/total: ??:??/??:??]: hyphen-base [22k]
Installing [2/7, time/total: 00:00/00:00]: kpathsea [31k]
Installing [3/7, time/total: 00:00/00:00]: kpathsea.x86_64-linux [46k]
Installing [4/7, time/total: 00:00/00:00]: tetex [70k]
Installing [5/7, time/total: 00:00/00:00]: tetex.x86_64-linux [1k]
Installing [6/7, time/total: 00:00/00:00]: texlive.infra [203k]
Installing [7/7, time/total: 00:00/00:00]: texlive.infra.x86_64-linux [90k]
Time used for installing the packages: 00:01
running mktexlsr ./texmf-dist ...
writing fmtutil.cnf to ./texmf-dist/web2c/fmtutil.cnf
writing updmap.cfg to ./texmf-dist/web2c/updmap.cfg
writing language.dat to ./texmf-var/tex/generic/config/language.dat
writing language.def to ./texmf-var/tex/generic/config/language.def
writing language.dat.lua to ./texmf-var/tex/generic/config/language.dat.lua
running mktexlsr ./texmf-var ./texmf-config ./texmf-dist ...
running updmap-sys --nohash ...done
re-running mktexlsr ./texmf-var ./texmf-config ...
pre-generating all format files, be patient...
running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-strict --all ...done
running package-specific postactions
finished with package-specific postactions

Logfile: ./install-tl.log
tlmgr: setting default package repository to http://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet
tlmgr: package repository http://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet (not verified: gpg unavailable)
tlmgr: no updates available
tlmgr: package repository http://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet (not verified: gpg unavailable)
[1/19, ??:??/??:??] install: babel [134k]
[2/19, 00:00/00:00] install: cm [233k]
[3/19, 00:00/00:00] install: etex [12k]
[4/19, 00:00/00:00] install: knuth-lib [30k]
[5/19, 00:00/00:00] install: latex [161k]
[6/19, 00:00/00:00] install: latex-bin.x86_64-linux [1k]
[7/19, 00:00/00:00] install: latex-bin [1k]
[8/19, 00:00/00:00] install: latex-fonts [18k]
[9/19, 00:00/00:00] install: latexconfig [5k]
[10/19, 00:00/00:00] install: luatex.x86_64-linux [3442k]
[11/19, 00:02/00:05] install: luatex [13k]
[12/19, 00:02/00:05] install: pdftex.x86_64-linux [763k]
[13/19, 00:02/00:04] install: pdftex [36k]
[14/19, 00:02/00:04] install: plain [60k]
[15/19, 00:02/00:04] install: tex-ini-files [4k]
[16/19, 00:02/00:04] install: unicode-data [220k]
[17/19, 00:02/00:04] install: xetex.x86_64-linux [6880k]
[18/19, 00:06/00:06] install: xetex [7k]
[19/19, 00:06/00:06] install: xetexconfig [1k]
running mktexlsr ...
done running mktexlsr.
running updmap-sys ...
done running updmap-sys.
regenerating fmtutil.cnf in /tmp/texlive/texmf-dist
running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine pdftex ...
done running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine pdftex.
running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine luatex ...
done running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine luatex.
running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine luajittex ...
done running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine luajittex.
running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine xetex ...
done running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine xetex.
tlmgr: package log updated: /tmp/texlive/texmf-var/web2c/tlmgr.log
tlmgr: package repository http://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet (not verified: gpg unavailable)
[1/49, ??:??/??:??] install: amscls [32k]
[2/49, 00:00/00:00] install: amsfonts [3542k]
[3/49, 00:02/00:11] install: amsmath [30k]
[4/49, 00:02/00:11] install: bibtex.x86_64-linux [70k]
[5/49, 00:02/00:10] install: bibtex [15k]
[6/49, 00:02/00:10] install: booktabs [3k]
[7/49, 00:02/00:10] install: caption [32k]
[8/49, 00:02/00:10] install: dvipdfmx.x86_64-linux [2k]
[9/49, 00:02/00:10] install: dvipdfmx [27k]
[10/49, 00:02/00:10] install: ec [258k]
[11/49, 00:02/00:10] install: etoolbox [8k]
[12/49, 00:02/00:10] install: euenc [4k]
[13/49, 00:02/00:10] install: fancyvrb [12k]
[14/49, 00:02/00:10] install: fontspec [26k]
[15/49, 00:02/00:09] install: framed [8k]
[16/49, 00:02/00:09] install: geometry [9k]
[17/49, 00:02/00:09] install: glyphlist [25k]
[18/49, 00:02/00:09] install: graphics [15k]
[19/49, 00:02/00:09] install: graphics-cfg [2k]
[20/49, 00:02/00:09] install: graphics-def [10k]
[21/49, 00:02/00:09] install: gsftopk.x86_64-linux [40k]
[22/49, 00:02/00:09] install: gsftopk [4k]
[23/49, 00:02/00:09] install: hyperref [106k]
[24/49, 00:02/00:09] install: ifluatex [3k]
[25/49, 00:02/00:09] install: iftex [2k]
[26/49, 00:02/00:09] install: ifxetex [2k]
[27/49, 00:03/00:14] install: l3kernel [125k]
[28/49, 00:03/00:13] install: l3packages [19k]
[29/49, 00:03/00:13] install: lm [11651k]
[30/49, 00:08/00:10] install: lualibs [72k]
[31/49, 00:08/00:09] install: luaotfload.x86_64-linux [1k]
[32/49, 00:08/00:09] install: luaotfload [432k]
[33/49, 00:09/00:10] install: makeindex.x86_64-linux [47k]
[34/49, 00:09/00:10] install: makeindex [5k]
[35/49, 00:09/00:10] install: mathspec [10k]
[36/49, 00:09/00:10] install: metafont.x86_64-linux [186k]
[37/49, 00:09/00:10] install: metafont [33k]
[38/49, 00:09/00:10] install: mfware.x86_64-linux [118k]
[39/49, 00:09/00:10] install: mfware [4k]
[40/49, 00:09/00:10] install: natbib [17k]
[41/49, 00:09/00:10] install: oberdiek [221k]
[42/49, 00:09/00:10] install: tipa [2809k]
[43/49, 00:10/00:10] install: titling [3k]
[44/49, 00:11/00:11] install: tools [39k]
[45/49, 00:11/00:11] install: upquote [2k]
[46/49, 00:11/00:11] install: url [6k]
[47/49, 00:11/00:11] install: xkeyval [13k]
[48/49, 00:11/00:11] install: xunicode [26k]
[49/49, 00:11/00:11] install: zapfding [46k]
running mktexlsr ...
done running mktexlsr.
running updmap-sys ...
done running updmap-sys.
regenerating fmtutil.cnf in /home/xiangyun/.TinyTeX/texmf-dist
running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --byfmt mf ...
done running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --byfmt mf.
tlmgr: package log updated: /home/xiangyun/.TinyTeX/texmf-var/web2c/tlmgr.log
TinyTeX installed to /home/xiangyun/.TinyTeX
Warning message:
In normalizePath("~/bin") :
  path[1]="/home/xiangyun/bin": No such file or directory
> normalizePath("~/bin")
[1] "/home/xiangyun/bin"
> path.expand("~/bin")
[1] "/home/xiangyun/bin"
> Sys.getenv('HOME')
[1] "/home/xiangyun"

此外，还在 rocker/geospatial 测试，这个docker镜像自带 tinytex，当前目录下本身不带 bin 目录的，发现如下情况，此时感觉警告信息是多余的

tinytex::tlmgr(
+     c('option', 'repository', 'https://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet')
+ )
tlmgr option repository https://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet
tlmgr: setting default package repository to https://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet
Warning message:
In normalizePath("~/bin") :
  path[1]="/home/xiangyun/bin": No such file or directory
> tinytex::tlmgr_install('fandol')
tlmgr install fandol
tlmgr: package repository https://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet (not verified: gpg unavailable)
[1/1, ??:??/??:??] install: fandol [21077k]
running mktexlsr ...
done running mktexlsr.
tlmgr: package log updated: /opt/TinyTeX/texmf-var/web2c/tlmgr.log
tlmgr path add
Warning messages:
1: In normalizePath("~/bin") :
  path[1]="/home/xiangyun/bin": No such file or directory
2: In normalizePath("~/bin") :
  path[1]="/home/xiangyun/bin": No such file or directory

yihui · 2018年1月21日

Cloud2016 谢谢，这个警告问题应该在最新版中修正了：devtools::install_github('yihui/tinytex')

yufree 这个 texlive_root() 是参数默认取值，不需要导出，你真正使用的时候用 uninstall_tinytex() 就可以了，不用把参数写全。

yufree · 2018年1月21日

yihui 谢谢！明白了，我当时直接复制了帮助文件中的命令运行提示找不到函数，参数留空反而可以了

bayeswhu · 2018年4月5日

@yihui 请问能否在lyx中使用TinyTex？没有搜到相关的文档。我从R中直接安装的，也不知道怎么和lyx连接起来，求助。

yihui · 2018年4月5日

bayeswhu 可以，不用特别的连接，装了就可以用（不管用什么方式装）。

貌似看见一个眼熟的 ID，话说你这有几年没来了啊。

bayeswhu · 2018年4月9日

@yihui 谢谢答复，我再试试。难得你还记得我啊，呵呵。
是的，前几年因为主要在用R和lyx写些东西，所以来的比较频繁，之后一段时间，转而用jupyter notebook写python去了，所以这边来得少一些。不过一直在关注你，blog也一直在看，看你有好东西，这不是马上就来了么~~~?

robertno · 2018年4月9日

大神啊，我试了下中文文档，出现如下错误：
output file: test.knit.md

"D:/software/Rstudio/bin/pandoc/pandoc" +RTS -K512m -RTS test.utf8.md --to latex --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash --output test.tex --template "D:\software\R\library\rmarkdown\rmd\latex\default-1.17.0.2.tex" --highlight-style tango --latex-engine pdflatex --variable graphics=yes --variable "geometry:margin=1in"
! Package inputenc Error: Unicode char 绗?(U+7B2C)
(inputenc) not set up for use with LaTeX.

错误: Failed to compile test.tex. See test.log for more info.
此外: Warning messages:
1: 运行命令'"pdflatex" -halt-on-error -interaction=batchmode "test.tex"'的状态是1
2: In grepl("==> Fatal error occurred", x, fixed = TRUE) :
输入的字符串1不适用于此语言环境
停止执行

这是什么鬼啊

Cloud2016 · 2018年4月9日

robertno
我这里给你几个中文模版 https://github.com/XiangyunHuang/R-Markdown-Template

yihui · 2018年4月9日

robertno 中文需要用 xelatex 编译。

Cloud2016 · 2018年4月29日

yihui 我发现 tinytex::tlmgr_update 不能升级 TinyTeX，考虑写个函数 tlmgr_upgrade 怎么样？

我查看了 TeXLive 的官方升级指南 <https://tug.org/texlive/upgrade.html> 强推大家卸载重装，不喜欢！不喜欢！

手动下载 update-tlmgr-latest.sh(exe)
升级

sudo sh update-tlmgr-latest.sh  -- --upgrade
tlmgr option repository yourrepo （这个可以省，之前安装过 TinyTeX，如果设置过）
tlmgr update --self --all

在 Windows 命令行窗口操作，

update-tlmgr-latest.exe  -- --upgrade 
tlmgr option repository yourrepo （这个可以省，之前安装过 TinyTeX，如果设置过）
tlmgr update --self --all

注意 windows 下执行第一行有个弹窗，点击安装就好

然后就升级完成了。

附升级日志

sudo sh update-tlmgr-latest.sh -- --upgrade

Verifying archive integrity... All good.
Uncompressing TeX Live Manager Updater  100%
./runme.sh: updating in /opt/TinyTeX...
./runme.sh: tlmgr version says this is TeX Live 2018
./runme.sh: have TL 2018, new version also 2018;
./runme.sh: using --upgrade doesn't make sense; terminating.

tlmgr update --self --all

tlmgr: package repository https://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet (verified)
[1/1, ??:??/??:??] update: texlive.infra [204k] (46470 -> 47457) ... done
Restarting tlmgr to complete update ...
tlmgr: package repository https://mirrors.tuna.tsinghua.edu.cn/CTAN/systems/texlive/tlnet (verified)
[ 1/35, ??:??/??:??] update: amsmath [30k] (45246 -> 47349) ... done
[ 2/35, 00:00/00:00] update: bibtex.x86_64-linux [72k] (43804 -> 47063) ... done
[ 3/35, 00:00/00:00] update: bibtex [15k] (44166 -> 47198) ... done
[ 4/35, 00:00/00:00] update: dvipdfmx [27k] (44224 -> 47198) ... done
[ 5/35, 00:01/02:06] update: geometry [9k] (19716 -> 47106) ... done
[ 6/35, 00:01/01:59] update: graphics [15k] (44703 -> 47350) ... done
[ 7/35, 00:01/01:48] update: gsftopk.x86_64-linux [40k] (43804 -> 47063) ... done
[ 8/35, 00:01/01:27] update: gsftopk [4k] (44166 -> 47198) ... done
[ 9/35, 00:01/01:26] update: hyphen-base [22k] (45751 -> 47260) ... done
[10/35, 00:01/01:17] update: ifluatex [3k] (46447 -> 47293) ... done
[11/35, 00:01/01:17] update: kpathsea.x86_64-linux [47k] (43804 -> 47063) ... done
[12/35, 00:01/01:04] update: kpathsea [31k] (46655 -> 47198) ... done
[13/35, 00:02/01:55] update: l3kernel [125k] (46720 -> 46875) ... done
[14/35, 00:02/01:22] update: latex [163k] (43813 -> 47377) ... done
[15/35, 00:02/00:59] update: latex-bin [1k] (45751 -> 47198) ... done
[16/35, 00:02/00:59] update: luaotfload [432k] (43194 -> 47444) ... done
[17/35, 00:03/00:52] update: luatex.x86_64-linux [7301k] (44582 -> 47245) ... done
[18/35, 00:07/00:14] update: luatex [13k] (46508 -> 47235) ... done
[19/35, 00:07/00:14] update: makeindex.x86_64-linux [49k] (43804 -> 47063) ... done
[20/35, 00:08/00:17] update: makeindex [5k] (44166 -> 47198) ... done
[21/35, 00:08/00:16] update: metafont.x86_64-linux [189k] (44013 -> 47063) ... done
[22/35, 00:08/00:16] update: metafont [33k] (45678 -> 47198) ... done
[23/35, 00:08/00:16] update: mfware.x86_64-linux [120k] (43804 -> 47063) ... done
[24/35, 00:08/00:16] update: mfware [4k] (44166 -> 47198) ... done
[25/35, 00:08/00:16] update: oberdiek [222k] (46447 -> 47293) ... done
[26/35, 00:09/00:17] update: pdftex.x86_64-linux [795k] (44065 -> 47140) ... done
[27/35, 00:09/00:16] update: pdftex [36k] (44166 -> 47199) ... done
[28/35, 00:09/00:16] update: tetex [70k] (46595 -> 47198) ... done
[29/35, 00:09/00:16] update: tex.x86_64-linux [172k] (44013 -> 47063) ... done
[30/35, 00:10/00:17] update: tex [1k] (44166 -> 47198) ... done
[31/35, 00:10/00:17] update: tools [39k] (43813 -> 47377) ... done
[32/35, 00:10/00:17] update: ttfutils.x86_64-linux [410k] (43804 -> 47063) ... done
[33/35, 00:10/00:17] update: ttfutils [106k] (45845 -> 47198) ... done
[34/35, 00:10/00:16] update: xecjk [126k] (46756 -> 47362) ... done
[35/35, 00:11/00:18] update: xetex.x86_64-linux [7123k] (44328 -> 47245) ... done
running mktexlsr ...
done running mktexlsr.
running updmap-sys ...
done running updmap-sys.
regenerating fmtutil.cnf in /opt/TinyTeX/texmf-dist
running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine luatex ...
done running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine luatex.
running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine pdftex ...
done running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine pdftex.
running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine luajittex ...
done running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine luajittex.
running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine xetex ...
done running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine xetex.
running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine tex ...
done running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --no-error-if-no-format --byengine tex.
running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --byfmt mf ...
done running fmtutil-sys --no-error-if-no-engine=luajittex,mfluajit --byfmt mf.
tlmgr: package log updated: /opt/TinyTeX/texmf-var/web2c/tlmgr.log

测试环境
Windows 8.1
R 3.5.0

sessionInfo()
R version 3.5.0 (2018-04-23)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 8.1 x64 (build 9600)

Matrix products: default

locale:
[1] LC_COLLATE=Chinese (Simplified)_China.936 
[2] LC_CTYPE=Chinese (Simplified)_China.936   
[3] LC_MONETARY=Chinese (Simplified)_China.936
[4] LC_NUMERIC=C                              
[5] LC_TIME=Chinese (Simplified)_China.936    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] compiler_3.5.0 tools_3.5.0    tinytex_0.5

Linux 即带 TinyTeX 的 rocker 镜像

sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Debian GNU/Linux 9 (stretch)

Matrix products: default
BLAS: /usr/lib/openblas-base/libblas.so.3
LAPACK: /usr/lib/libopenblasp-r0.2.19.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=en_US.UTF-8       
 [4] LC_COLLATE=en_US.UTF-8     LC_MONETARY=en_US.UTF-8    LC_MESSAGES=C             
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] compiler_3.4.4 tools_3.4.4    yaml_2.1.18

吊诡的是 tlmgr update --self --all 竟然不能升级，虽然能更新包管理器和 TeX 包，目前的方案是，如果执行tlmgr_upgrade 就根据系统类型下载 update-tlmgr-latest.sh (update-tlmgr-latest.exe)，并执行

yihui · 2018年4月30日

Cloud2016 算了，我看官方的描述如此复杂以及强烈不推荐升级，那还是按官方说的删了重装新的好了，反正就是几分钟的事儿。

tinytex::uninstall_tinytex()
tinytex::install_tinytex()

另外，官方文档中已经没有 update-tlmgr-latest.exe 了。

Cloud2016 · 2018年5月1日

yihui <https://tug.org/texlive/upgrade.html> 这里的指南是给 TeX Live 2017 to 2018，所以搞得那么复杂，我是意识到 TinyTeX 不像 TeXLive 有版本号（比如 2017,2018等年份），升级过程其实是简化成两行了（如果用管道就是一行）

wget http://mirrors.rit.edu/CTAN/systems/texlive/tlnet/update-tlmgr-latest.sh
sudo sh update-tlmgr-latest.sh  -- --upgrade

其中 <http://mirrors.rit.edu/CTAN/> 可以拿离自己最近的镜像站代替如 <https://mirrors.tuna.tsinghua.edu.cn/CTAN/>

类似地，Windows 下

wget http://mirrors.rit.edu/CTAN/systems/texlive/tlnet/update-tlmgr-latest.exe
update-tlmgr-latest.exe  -- --upgrade

exe 文件是有的，打开 <http://mirrors.rit.edu/CTAN/systems/texlive/tlnet/> 可以看到

最后，卸载重装的办法，主要是我嫌麻烦，之前装过的又得再装一遍，另一方面不全记得装过哪些包。幸好 rmarkdown 具有自动安装缺失包的特点，基本解决了重装带来的后遗症。