回复 第6楼 的 liuxingbei:Sorry for my careless reading. Fisher's exact test can surely be used. Its less often application in larger contingency tables is mainly due to computational burden. But this does not seem to be a big problem for your data.
As Tracy X suggested, a continuity correction is also possible.
As for jamestony's comments, the question of how to do a reasonable test still remains after fitting a logistic regression. This is not to say I disagree with the use of logistic regression. It may actually be more powerful against certain alternatives, like the trend test (the trend test is equivalent to the socre test in logistic regression).
My point is that probably the difference in your data is so obvious that any reasonable tests should reject the null. Thus, probably there is not much difference in choosing any one of them.
PS: Just for curiosity about your criterion: why do more advanced tumors have lower metastatis rates? Because most of those with metastatsis died before they enter more advanced stages? Moreover, isn't the criterion you used to classify the stages considering metastatsis status? If so, they will surely be dependent, without needing to see any data.