各位好,我想用R语言下载GEO数据库中的GSE42872,但是总是报错,请各位帮我出出主意,谢谢。
我使用的代码如下:
library(GEOquery)
eSet <- getGEO("GSE42872", destdir = '.', getGPL = F)
报错的信息如下:
Found 1 file(s)
GSE42872_series_matrix.txt.gz
Using locally cached version: ./GSE42872_series_matrix.txt.gz
Error in parseGSEMatrix(destfile, destdir = destdir, AnnotGPL = AnnotGPL, :
parsing failed--expected only one '!series_data_table_begin'
下面是我的系统信息:
sessionInfo()
R version 3.5.1 (2018-07-02)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows >= 8 x64 (build 9200)
Matrix products: default
locale:
[1] LC_COLLATE=Chinese (Simplified)_China.936
[2] LC_CTYPE=Chinese (Simplified)_China.936
[3] LC_MONETARY=Chinese (Simplified)_China.936
[4] LC_NUMERIC=C
[5] LC_TIME=Chinese (Simplified)_China.936
attached base packages:
[1] parallel stats graphics grDevices utils datasets
[7] methods base
other attached packages:
[1] GEOquery_2.48.0 Biobase_2.40.0 BiocGenerics_0.26.0
loaded via a namespace (and not attached):
[1] Rcpp_0.12.18 tidyr_0.8.1 crayon_1.3.4
[4] dplyr_0.7.6 assertthat_0.2.0 R6_2.2.2
[7] magrittr_1.5 pillar_1.3.0 rlang_0.2.2
[10] curl_3.2 rstudioapi_0.7 bindrcpp_0.2.2
[13] limma_3.36.5 xml2_1.2.0 tools_3.5.1
[16] readr_1.1.1 glue_1.3.0 purrr_0.2.5
[19] hms_0.4.2 compiler_3.5.1 pkgconfig_2.0.2
[22] tidyselect_0.2.4 bindr_0.1.1 tibble_1.4.2 `
请问我应该怎么解决这个问题呢?