今天在尝试安装这几个包时
source("http://bioconductor.org/biocLite.R")
biocLite("affy")
biocLite("affyPLM")
biocLite("RColorBrewer")
biocLite("impute")
biocLite("lipute")
biocLite("limma")
biocLite("pheatmap")
biocLite("ggplot2")
发现提示已安装,但有几个不能使用,其中一个错误代码如下
biocLite("pheatmap")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.7 (BiocInstaller 1.30.0), R 3.5.1 (2018-07-02).
Installing package(s) ‘pheatmap’
trying URL 'https://mirrors.ustc.edu.cn/CRAN/bin/windows/contrib/3.5/pheatmap_1.0.10.zip'
Content type 'application/zip' length 75403 bytes (73 K?
downloaded 73 KB
package ‘pheatmap’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\zhangying\AppData\Local\Temp\RtmpiYUC1k\downloaded_packages
installation path not writeable, unable to update packages: foreign, lattice, MASS, Matrix,
mgcv, survival
因此查看安装路径,发现他们与其他可用的包不同,他们被安装在了另一个路径上,不知道为什么在不选择的情况下会有这两种安装路径。
XLConnectJars "XLConnectJars" "C:/Users/zhangying/Documents/R/win-library/3.5"
xopen "xopen" "C:/Users/zhangying/Documents/R/win-library/3.5"
XVector "XVector" "C:/Users/zhangying/Documents/R/win-library/3.5"
zip "zip" "C:/Users/zhangying/Documents/R/win-library/3.5"
zlibbioc "zlibbioc" "C:/Users/zhangying/Documents/R/win-library/3.5"
zoo "zoo" "C:/Users/zhangying/Documents/R/win-library/3.5"
base "base" "C:/Program Files/R/R/library"
boot "boot" "C:/Program Files/R/R/library"
class "class" "C:/Program Files/R/R/library"
cluster "cluster" "C:/Program Files/R/R/library"
codetools "codetools" "C:/Program Files/R/R/library"
compiler "compiler" "C:/Program Files/R/R/library"
datasets "datasets" "C:/Program Files/R/R/library"
foreign "foreign" "C:/Program Files/R/R/library"
graphics "graphics" "C:/Program Files/R/R/library"
grDevices "grDevices" "C:/Program Files/R/R/library"
grid "grid" "C:/Program Files/R/R/library"
KernSmooth "KernSmooth" "C:/Program Files/R/R/library"
lattice "lattice" "C:/Program Files/R/R/library"
MASS "MASS" "C:/Program Files/R/R/library"
Matrix "Matrix" "C:/Program Files/R/R/library"
methods "methods" "C:/Program Files/R/R/library"
mgcv "mgcv" "C:/Program Files/R/R/library"
nlme "nlme" "C:/Program Files/R/R/library"
nnet "nnet" "C:/Program Files/R/R/library"
parallel "parallel" "C:/Program Files/R/R/library"
rpart "rpart" "C:/Program Files/R/R/library"
spatial "spatial" "C:/Program Files/R/R/library"
splines "splines" "C:/Program Files/R/R/library"
stats "stats" "C:/Program Files/R/R/library"
stats4 "stats4" "C:/Program Files/R/R/library"
survival "survival" "C:/Program Files/R/R/library"
tcltk "tcltk" "C:/Program Files/R/R/library"
tools "tools" "C:/Program Files/R/R/library"
这是截选部分,
按网友的提示将这几个包卸载然后重新指定路径安装也不可以,出现如下提示
installed.packages(c("Matrix", "mgcv", "survival","foreign", "lattice", "MASS" ), lib = "C:/Users/zhangying/Documents/R/win-library/3.5")
Package LibPath Version Priority Depends Imports LinkingTo Suggests Enhances License
License_is_FOSS License_restricts_use OS_type Archs MD5sum NeedsCompilation Built
请问现在该如何解决安装包不能用的问题,并且以后也可以避免此类问题的产生。
谢谢!??