书的源代码在github <https://github.com/christophergandrud/Rep-Res-Book> ，由于年久失修（最新的记录也是在两年前），不少R包变动，链接变动，勘误表 <https://christophergandrud.github.io/RepResR-RStudio/errata.htm> 作者打算在第三版中的变化列表 <https://github.com/christophergandrud/Rep-Res-Book/issues/57> 。

书籍目录 <https://github.com/christophergandrud/RepResR-RStudio/raw/gh-pages/other/ReproducibleResearchTOC.pdf>

由于上面这些原因，从源码编译这本书，变得困难，甚至只能绕过某些坑，才能编译出来，我费了牛劲编译了一个版本，书中 ? 处是参考文献。下载地址 <https://github.com/Cloud2016/colors-in-plots/blob/master/latex/(book2015)Reproducible%20Research%20with%20R%20and%20RStudio.pdf>
有想淌坑的，先准备这些

sessionInfo()
R version 3.4.1 (2017-06-30)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 8.1 x64 (build 9600)

Matrix products: default

locale:
[1] LC_COLLATE=Chinese (Simplified)_China.936 
[2] LC_CTYPE=Chinese (Simplified)_China.936   
[3] LC_MONETARY=Chinese (Simplified)_China.936
[4] LC_NUMERIC=C                              
[5] LC_TIME=Chinese (Simplified)_China.936    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] Zelig_5.1-3         xtable_1.8-2        WDI_2.4            
 [4] tidyr_0.6.3         texreg_1.36.23      survival_2.41-3    
 [7] stargazer_5.2       shiny_1.0.3         rvest_0.3.2        
[10] xml2_1.1.1          RJSONIO_1.3-0       rmarkdown_1.6      
[13] repmis_0.5          RCurl_1.95-4.8      bitops_1.0-6       
[16] quantmod_0.4-10     TTR_0.23-2          xts_0.10-0         
[19] zoo_1.8-0           packrat_0.4.8-1     openair_2.1-0      
[22] markdown_0.8        magrittr_1.5        knitcitations_1.0.8
[25] httr_1.3.1          htmlwidgets_0.9     highlight_0.4.7.1  
[28] googleVis_0.6.2     ggplot2_2.2.1       formatR_1.5        
[31] extrafont_0.17      dplyr_0.7.2         digest_0.6.12      
[34] devtools_1.13.3     data.table_1.10.4   countrycode_0.19   
[37] brew_1.0-6          animation_2.5       knitr_1.17         

loaded via a namespace (and not attached):
 [1] minqa_1.2.4         VGAM_1.0-4          colorspace_1.3-2   
 [4] rjson_0.2.15        rprojroot_1.2       hexbin_1.27.1      
 [7] MatrixModels_0.4-1  bit64_0.9-7         lubridate_1.6.0    
[10] RefManageR_0.14.12  codetools_0.2-15    splines_3.4.1      
[13] R.methodsS3_1.7.1   Formula_1.2-2       jsonlite_1.5       
[16] nloptr_1.0.4        mcmc_0.9-5          pbkrtest_0.4-7     
[19] Rttf2pt1_1.3.4      cluster_2.0.6       geepack_1.2-1      
[22] R.oo_1.21.0         mapproj_1.2-5       compiler_3.4.1     
[25] backports_1.1.0     assertthat_0.2.0    Matrix_1.2-10      
[28] lazyeval_0.2.0      survey_3.32-1       quantreg_5.33      
[31] htmltools_0.3.6     tools_3.4.1         bindrcpp_0.2       
[34] coda_0.19-1         gtable_0.2.0        glue_1.1.1         
[37] reshape2_1.4.2      maps_3.2.0          Rcpp_0.12.12       
[40] Amelia_1.7.4        nlme_3.1-131        extrafontdb_1.0    
[43] lmtest_0.9-35       stringr_1.2.0       lme4_1.1-13        
[46] mime_0.5            twitteR_1.1.9       XML_3.98-1.9       
[49] MASS_7.3-47         scales_0.4.1        miscTools_0.6-22   
[52] parallel_3.4.1      sandwich_2.4-0      SparseM_1.77       
[55] RColorBrewer_1.1-2  curl_2.8.1          memoise_1.1.0      
[58] latticeExtra_0.6-28 stringi_1.1.5       highr_0.6          
[61] AER_1.2-5           bibtex_0.4.2        rlang_0.1.2        
[64] pkgconfig_2.0.1     evaluate_0.10.2     lattice_0.20-35    
[67] bindr_0.1           labeling_0.3        bit_1.1-12         
[70] plyr_1.8.4          R6_2.2.2            DBI_0.7            
[73] foreign_0.8-69      withr_2.0.0         mgcv_1.8-17        
[76] nnet_7.3-12         tibble_1.3.3        car_2.1-5          
[79] maxLik_1.3-4        grid_3.4.1          R.cache_0.12.0     
[82] httpuv_1.3.5        MCMCpack_1.4-0      R.utils_2.5.0      
[85] MatchIt_3.0.1       stats4_3.4.1        munsell_0.4.3